The numbering difference comes from the part 110 which has some of the hole patterns doubled (there are two hole patterns one over the other one). Double features (holes are considered beam features) represents a criteria that triggers a different between the objects during Identical Part Detection, performed by the Advance Steel numbering.
In order to fix it and allow AS to give the same mark to those objects, you need to fix the model. You either need to "double" the holes on the objects that has single holes, or remove the extra ones from part 110.
I've attached a picture in which I highlighted the places on part 110 that contains double holes. You can see that by selecting with click one of those holes, and pressing delete. This will leave you with a hole there (the other one) rather then deleting the hole.
Attachment: multiple holes.png